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10X Genomics cellranger 3 1 0
Cellranger 3 1 0, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/cellranger/cellranger/pmc08772395-906-0-3
Average 86 stars, based on 1 article reviews
cellranger 3 1 0 - by Bioz Stars, 2026-09
86/100 stars

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Related Articles

other:

Article Title: Tissue rigidity phase transition shapes morphogen gradients.
Article Snippet: Reads were processed using CellRanger (v 7.1.0, 10x Genomics).

Article Title: Melanoma cell states shape spatial tumor-immune ecosystems to dictate the efficacy of anti-PD1 immunotherapy.
Article Snippet: SnRNA- seq data were processed using CellRanger from 10X Genomics (V.7.1.0), using the “multi” algorithm and the human reference genome refdata- gexGRCh38- 2020- A for quantification.

Article Title: Activated immune cells present a lung interstitial-to-airway/alveolar cross-compartment sharing pattern in severe pneumonia.
Article Snippet: CellRanger (version 7.0.0, 10x Genomics) was used to quantify transcript.

Article Title: Large-scale and innervated functional human gut tissues for transplantation via transient spheroid confinement.
Article Snippet: FASTQ files were first processed and checked for quality using Cellranger (https://github.com/10XGenomics/ cellranger), which aligns the reads in each sample against the human hg38 genome.

Article Title: Cross-tissue atlas of mucosa-associated lymphoid tissue lymphomas reveals intratumoral heterogeneity and microenvironmental subtypes
Article Snippet: CellRanger (v7.0.1) , 10x Genomics , https://10xgenomics.com.

Single Cell:

Article Title: Non-lytic viral immunotherapy induces long-term glioblastoma survival and tumor-specific immunity without eliciting an antiviral response.
Article Snippet: .. Single-cell FASTQ files, along with paired TCR V(D)J immune profiling FASTQ files, were aligned using CellRanger (version 7.2, 10X Genomics). .. The resulting expression matrices were imported into RStudio (version 4.3.2) for downstream analysis.

Sequencing:

Article Title: Evolutionary Rewiring of Root Cell-Type Nitrogen Responses
Article Snippet: .. Sequencing reads obtained from scRNAseq were mapped to the respective reference genomes using CellRanger (v8.0.1, 10x Genomics). .. For Arabidopsis, the TAIR10 reference genome and the corresponding gene annotation (Ensembl Plants release 52) were used to build the CellRanger reference using cellranger mkref.

Generated:

Article Title: Eosinophils drive intestinal remodelling and innate defence in reproduction.
Article Snippet: Libraries were prepared using Chromium Next GEM Single Cell 3′ Reagent kits v.3.1 (10x Genomics) following the manufacturer’s instructions and sequenced on a NovaSeq 6000 System. .. Cell by gene count matrices were generated for each sample using the count function from CellRanger v.7.1.0 (10x Genomics). ..



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